The @ and WWW versions use the same Google Verification ID, so for the first domain name, I can use the SEO tab to enter that. However it only allows a single entry, and some of my clients have 40 or more domain names for one site [don’t ask]. Is the only way to add #2+ to paste the META tag into the HEAD directly?
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As I understand it, Google re-verifies sites regularly, to verify that the same site is at the same domain, so verifying one-at a time will probably ultimately break when Google re-attempts this.
A safer workaround, the one I used, might be to use the Custom Code HEAD and paste the full verification META tags. It’s not as pretty for designers, but it works well.
I’m re-evaluating the merits of multiple domain names now, if there’s no longer any SEO benefit, we may abandon verification for multiple domains altogether, in which case verifying only a single Search Console domain is “best practice”.
If multiple domains still have significant SEO, I’ll add support for multiple domain verification to the Wishlist.