Can't duplicate site without getting a corrupted file

I’ve been having problems with a couple of elements on a nav bar jumping around when I scroll. I’ve tried everything from redoing the items to changing z-index, etc. Nothing works. It seems to be involved with an interaction between two elements. As a last resort I tried duplicating the file and the duplicate is missing numerous elements. I repeated this a couple of times. The share link is .
Images of the problem below. Thanks


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